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Bra001050 protein (Brassica rapa) - STRING interaction network
"Bra001050" - AT3G02540 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001050AT3G02540 (E=7e-111) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding (401 aa)    
Predicted Functional Partners:
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.991
Bra029711
AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (310 aa)
       
  0.979
Bra023578
AT5G16630 (E=6e-259) ATRAD4, RAD4 | RAD4; damaged DNA binding (1323 aa)
       
  0.978
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.978
Bra010028
AT5G49570 (E=0.0) AtPNG1 | AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1); catalytic/ peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase (722 aa)
       
  0.975
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
  0.973
Bra023205
AT4G24940 (E=3e-050) SAE1A, AT-SAE1-1, ATSAE1A | SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme (215 aa)
     
  0.969
Bra024165
AT4G29040 (E=7e-047) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (323 aa)
     
  0.968
Bra011079
AT4G29040 (E=3e-227) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (443 aa)
     
  0.968
Bra010342
AT4G29040 (E=3e-224) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (445 aa)
     
  0.968
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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