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Bra001053 protein (Brassica rapa) - STRING interaction network
"Bra001053" - AT3G02580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001053AT3G02580 (E=9e-151) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (282 aa)    
Predicted Functional Partners:
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
     
0.991
Bra014252
AT1G50430 (E=6e-249) DWF5, PA, LE, ST7R, 7RED | DWF5 (DWARF 5); sterol delta7 reductase (432 aa)
     
  0.982
Bra033117
AT4G12110 (E=1e-169) SMO1-1, ATSMO1, ATSMO1-1 | SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (298 aa)
     
  0.973
Bra019269
AT4G22756 (E=4e-019) SMO1-2, ATSMO1, ATSMO1-2, SMO1 | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (113 aa)
     
  0.973
Bra013643
AT4G22756 (E=4e-157) SMO1-2, ATSMO1, ATSMO1-2, SMO1 | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (444 aa)
     
  0.973
Bra039978
AT2G29390 (E=6e-139) ATSMO2 | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (321 aa)
     
0.959
Bra038233
AT3G19820 (E=0.0) DWF1, DIM, EVE1, DIM1, CBB1 | DWF1 (DWARF 1); calmodulin binding / catalytic (561 aa)
   
 
  0.949
Bra022459
AT3G19820 (E=0.0) DWF1, DIM, EVE1, DIM1, CBB1 | DWF1 (DWARF 1); calmodulin binding / catalytic (561 aa)
   
 
  0.949
Bra012204
AT1G20050 (E=9e-105) HYD1 | HYD1 (HYDRA1); C-8 sterol isomerase (220 aa)
     
 
  0.938
Bra019965
AT1G10030 (E=4e-038) ERG28 | ERG28 (Arabidopsis homolog of yeast ergosterol28) (164 aa)
       
 
  0.931
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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