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Bra001056 protein (Brassica rapa) - STRING interaction network
"Bra001056" - AT3G02600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001056AT3G02600 (E=2e-109) LPP3, ATLPP3 | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase (301 aa)    
Predicted Functional Partners:
Bra024550
AT1G22940 (E=3e-253) TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase (526 aa)
       
    0.847
Bra034073
AT3G09560 (E=5e-232) | lipin family protein (857 aa)
       
  0.765
Bra033646
AT5G42870 (E=2e-210) | lipin family protein (837 aa)
       
  0.765
Bra029774
AT3G09560 (E=1e-242) | lipin family protein (813 aa)
       
  0.765
Bra027461
AT5G42870 (E=6e-230) | lipin family protein (823 aa)
       
  0.765
Bra022399
AT3G09560 (E=5e-092) | lipin family protein (216 aa)
       
  0.765
Bra011968
AT3G09560 (E=4e-030) | lipin family protein (192 aa)
       
  0.765
Bra009449
AT5G04490 (E=2e-109) VTE5 | VTE5 (vitamin E pathway gene5); phosphatidate cytidylyltransferase/ phytol kinase (299 aa)
     
  0.759
Bra006754
AT5G58560 (E=3e-119) | phosphatidate cytidylyltransferase family protein (491 aa)
     
  0.759
Bra005809
AT5G04490 (E=5e-096) VTE5 | VTE5 (vitamin E pathway gene5); phosphatidate cytidylyltransferase/ phytol kinase (307 aa)
     
  0.759
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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