STRINGSTRING
Bra001061 protein (Brassica rapa) - STRING interaction network
"Bra001061" - AT3G02760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001061AT3G02760 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (858 aa)    
Predicted Functional Partners:
Bra008506
AT1G64790 (E=0.0) | binding (2613 aa)
     
 
  0.922
Bra035466
AT1G58080 (E=2e-190) ATATP-PRT1, HISN1A | ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase (407 aa)
   
  0.887
Bra027887
AT1G58080 (E=7e-198) ATATP-PRT1, HISN1A | ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase (407 aa)
   
  0.887
Bra019991
AT1G09795 (E=9e-190) ATATP-PRT2, HISN1B | ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase (403 aa)
   
  0.887
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
   
  0.879
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
   
  0.879
Bra017018
AT2G40290 (E=8e-158) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (429 aa)
     
  0.851
Bra009215
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (377 aa)
     
  0.851
Bra009212
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (453 aa)
     
  0.851
Bra004970
AT2G40290 (E=3e-155) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (342 aa)
     
  0.851
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]