STRINGSTRING
Bra001070 protein (Brassica rapa) - STRING interaction network
"Bra001070" - AT3G02970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001070AT3G02970 (E=8e-151) EXL6 | EXL6 (EXORDIUM LIKE 6) (327 aa)    
Predicted Functional Partners:
Bra021711
AT2G31220 (E=1e-153) | basic helix-loop-helix (bHLH) family protein (441 aa)
           
  0.477
Bra018270
AT2G31220 (E=2e-143) | basic helix-loop-helix (bHLH) family protein (454 aa)
           
  0.477
Bra009256
AT5G07520 (E=4e-010) GRP18, ATGRP18, ATGRP-8 | GRP18 (GLYCINE-RICH PROTEIN 18); lipid binding / nutrient reservoir (175 aa)
           
  0.454
Bra015480
AT1G06170 (E=3e-185) | basic helix-loop-helix (bHLH) family protein (427 aa)
           
  0.406
Bra007966
AT1G71160 (E=2e-222) KCS7 | KCS7 (3-KETOACYL-COA SYNTHASE 7); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (449 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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