STRINGSTRING
Bra001073 protein (Brassica rapa) - STRING interaction network
"Bra001073" - AT3G03150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001073AT3G03150 (E=4e-047) | unknown protein (117 aa)    
Predicted Functional Partners:
Bra016717
AT1G13940 (E=0.0) | unknown protein (919 aa)
           
  0.461
Bra012449
AT1G69360 (E=9e-213) | unknown protein (869 aa)
           
  0.461
Bra005384
AT2G34890 (E=1e-279) | CTP synthase, putative / UTP--ammonia ligase, putative ; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (621 aa)
           
  0.461
Bra004375
AT1G26620 (E=7e-162) | unknown protein (834 aa)
           
  0.461
Bra031589
AT1G07645 (E=5e-072) ATDSI-1VOC | ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN); catalytic (137 aa)
           
  0.457
Bra018692
AT1G07645 (E=2e-068) ATDSI-1VOC | ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN); catalytic (171 aa)
           
  0.457
Bra008529
AT4G00750 (E=0.0) | dehydration-responsive family protein (621 aa)
           
  0.456
Bra004933
AT2G45750 (E=0.0) | dehydration-responsive family protein (632 aa)
           
  0.456
Bra037907
AT4G10110 (E=9e-070) | RNA recognition motif (RRM)-containing protein (164 aa)
           
  0.416
Bra018954
AT1G52220 (E=4e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR-AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species- Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (145 aa)
           
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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