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Bra001077 protein (Brassica rapa) - STRING interaction network
"Bra001077" - AT3G03430 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001077AT3G03430 (E=6e-041) | polcalcin, putative / calcium-binding pollen allergen, putative (83 aa)    
Predicted Functional Partners:
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
     
  0.989
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
       
  0.899
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
       
  0.899
Bra023578
AT5G16630 (E=6e-259) ATRAD4, RAD4 | RAD4; damaged DNA binding (1323 aa)
       
  0.895
Bra023379
AT5G12850 (E=1e-216) | zinc finger (CCCH-type) family protein (911 aa)
       
  0.879
Bra002099
AT2G17890 (E=9e-282) CPK16 | CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (894 aa)
       
  0.878
Bra033557
AT2G17290 (E=3e-250) CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (895 aa)
     
  0.871
Bra020035
AT5G19360 (E=2e-281) CPK34 | CPK34; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (517 aa)
     
  0.871
Bra017746
AT4G36070 (E=2e-264) CPK18 | CPK18; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (541 aa)
     
  0.871
Bra008910
AT5G12180 (E=3e-279) CPK17 | CPK17; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (522 aa)
     
  0.871
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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