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Bra001079 protein (Brassica rapa) - STRING interaction network
"Bra001079" - AT3G03490 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001079AT3G03490 (E=8e-100) PEX19-1 | PEX19-1 (peroxin 19-1) (244 aa)    
Predicted Functional Partners:
Bra010652
AT4G39850 (E=0.0) PXA1, PED3, CTS | PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances (1433 aa)
     
  0.995
Bra021296
AT3G18160 (E=4e-153) PEX3-1 | peroxin-3 family protein (443 aa)
     
  0.975
Bra018746
AT1G48635 (E=9e-171) PEX3, PEX3-2 | peroxin-3 family protein (367 aa)
     
  0.975
Bra001698
AT1G48635 (E=4e-135) PEX3, PEX3-2 | peroxin-3 family protein (367 aa)
     
  0.975
Bra035880
AT5G62810 (E=5e-154) PEX14, ATPEX14, PED2 | PEX14; protein binding / protein transporter (488 aa)
       
 
  0.959
Bra010124
AT5G62810 (E=8e-163) PEX14, ATPEX14, PED2 | PEX14; protein binding / protein transporter (531 aa)
       
 
  0.959
Bra007757
AT2G26350 (E=1e-158) PEX10, ATPEX10 | PEX10; protein binding / zinc ion binding (366 aa)
       
 
  0.953
Bra007708
AT2G26350 (E=7e-071) PEX10, ATPEX10 | PEX10; protein binding / zinc ion binding (290 aa)
       
 
  0.953
Bra003533
AT1G79810 (E=1e-164) TED3, PEX2, ATPEX2 | TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding (333 aa)
       
 
  0.949
Bra040195
AT3G04460 (E=5e-095) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding ; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (381 aa)
       
 
  0.945
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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