STRINGSTRING
Bra001089 protein (Brassica rapa) - STRING interaction network
"Bra001089" - AT3G03770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001089AT3G03770 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (796 aa)    
Predicted Functional Partners:
Bra026848
AT1G14205 (E=2e-051) | ribosomal protein L18 family protein (164 aa)
           
  0.657
Bra007166
AT3G55470 (E=2e-078) | C2 domain-containing protein (155 aa)
           
  0.606
Bra014740
AT3G55470 (E=6e-075) | C2 domain-containing protein (154 aa)
           
  0.572
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
           
  0.499
Bra001326
AT3G09070 (E=7e-217) | glycine-rich protein (659 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]