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Bra001092 protein (Brassica rapa) - STRING interaction network
"Bra001092" - AT3G03860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001092AT3G03860 (E=2e-134) ATAPRL5 | ATAPRL5 (APR-like 5) (303 aa)    
Predicted Functional Partners:
Bra014330
AT2G01270 (E=1e-252) AtQSOX2 | AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase (523 aa)
           
  0.546
Bra034408
AT1G35620 (E=2e-215) ATPDIL5-2, ATPDI8, PDI8 | ATPDIL5-2 (PDI-LIKE 5-2); protein disulfide isomerase (435 aa)
           
  0.541
Bra018958
AT1G52260 (E=2e-231) ATPDIL1-5, ATPDI3, PDI3 | ATPDIL1-5 (PDI-LIKE 1-5); protein disulfide isomerase (529 aa)
           
  0.541
Bra005546
AT2G32920 (E=1e-206) ATPDIL2-3, PDI9, ATPDI9 | ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase (443 aa)
           
  0.541
Bra026169
AT1G15020 (E=2e-251) ATQSOX1, QSO2 | thioredoxin family protein (524 aa)
           
  0.505
Bra035770
AT3G20560 (E=1e-253) ATPDIL5-3, PDI12, ATPDI12 | ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase (483 aa)
           
  0.426
Bra019071
AT4G27080 (E=6e-257) ATPDIL5-4, ATPDI7, PDI7 | thioredoxin family protein (478 aa)
           
  0.426
Bra010413
AT4G27080 (E=1e-240) ATPDIL5-4, ATPDI7, PDI7 | thioredoxin family protein (480 aa)
           
  0.426
Bra001793
AT3G20560 (E=4e-249) ATPDIL5-3, PDI12, ATPDI12 | ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase (484 aa)
           
  0.426
Bra015665
AT1G77510 (E=2e-246) ATPDIL1-2, PDI6, ATPDI6 | ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase (509 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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