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Bra001096 protein (Brassica rapa) - STRING interaction network
"Bra001096" - AT3G04160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001096AT3G04160 (E=8e-102) | unknown protein (643 aa)    
Predicted Functional Partners:
Bra018574
AT1G09230 (E=2e-184) | RNA recognition motif (RRM)-containing protein (440 aa)
     
   
  0.606
Bra012749
AT4G16060 (E=5e-126) | unknown protein (301 aa)
           
  0.606
Bra004561
AT2G46200 (E=1e-155) | unknown protein (377 aa)
           
  0.605
Bra000304
AT2G43370 (E=2e-118) | U1 small nuclear ribonucleoprotein 70 kDa, putative (321 aa)
     
   
  0.581
Bra011346
AT4G32420 (E=6e-101) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (772 aa)
           
  0.472
Bra032587
AT1G02750 (E=3e-072) | zinc ion binding (225 aa)
           
  0.448
Bra021530
AT3G14075 (E=5e-269) | lipase class 3 family protein (633 aa)
           
  0.448
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
   
  0.418
Bra018265
AT5G22370 (E=4e-136) EMB1705, QQT1 | QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (306 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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