STRINGSTRING
Bra001101 protein (Brassica rapa) - STRING interaction network
"Bra001101" - AT3G04300 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001101AT3G04300 (E=5e-049) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cupin, RmlC-type (InterPro-IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro-IPR008579), RmlC-like jelly roll fold (InterPro-IPR014710); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G10300.1); Has 364 Blast hits to 364 proteins in 91 species- Archae - 0; Bacteria - 191; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 95 (source- NCBI BLink). (96 aa)    
Predicted Functional Partners:
Bra021801
AT2G32650 (E=6e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- Cupin, RmlC-type (InterPro-IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro-IPR008579), RmlC-like jelly roll fold (InterPro-IPR014710); BEST Arabidopsis thaliana protein match is- PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR-AT2G32180.1); Has 169 Blast hits to 169 proteins in 46 species- Archae - 0; Bacteria - 71; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source- NCBI BLink). (137 aa)
   
          0.526
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
           
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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