STRINGSTRING
Bra001103 protein (Brassica rapa) - STRING interaction network
"Bra001103" - AT3G04360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001103AT3G04360 (E=1e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 9 plant structures; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- C2 membrane targeting protein (InterPro-IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro-IPR008973), C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- C2 domain-containing prot [...] (397 aa)    
Predicted Functional Partners:
Bra009704
AT5G23710 (E=8e-083) | DNA binding / DNA-directed RNA polymerase (233 aa)
           
  0.571
Bra026486
AT5G23710 (E=1e-049) | DNA binding / DNA-directed RNA polymerase (196 aa)
           
  0.483
Bra028974
AT5G55530 (E=2e-164) | C2 domain-containing protein (400 aa)
           
  0.426
Bra018857
AT1G50570 (E=3e-111) | C2 domain-containing protein (404 aa)
           
  0.426
Bra002899
AT5G55530 (E=3e-176) | C2 domain-containing protein (396 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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