STRINGSTRING
Bra001104 protein (Brassica rapa) - STRING interaction network
"Bra001104" - AT3G04380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001104AT3G04380 (E=5e-194) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (756 aa)    
Predicted Functional Partners:
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra034055
AT3G11250 (E=1e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.999
Bra029752
AT3G11250 (E=3e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.999
Bra001324
AT3G09200 (E=7e-147) | 60S acidic ribosomal protein P0 (RPP0B) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.999
Bra000159
AT2G40010 (E=8e-149) | 60S acidic ribosomal protein P0 (RPP0A) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (319 aa)
   
  0.999
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Bra036669
AT3G24830 (E=2e-111) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
  0.999
Bra036161
AT5G48760 (E=5e-112) | 60S ribosomal protein L13A (RPL13aD) (206 aa)
   
  0.999
Bra020681
AT5G48760 (E=3e-111) | 60S ribosomal protein L13A (RPL13aD) (206 aa)
   
  0.999
Bra015088
AT3G24830 (E=3e-110) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]