STRINGSTRING
Bra001105 protein (Brassica rapa) - STRING interaction network
"Bra001105" - AT3G04460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001105AT3G04460 (E=9e-092) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding (326 aa)    
Predicted Functional Partners:
Bra007757
AT2G26350 (E=1e-158) PEX10, ATPEX10 | PEX10; protein binding / zinc ion binding (366 aa)
     
 
  0.961
Bra007708
AT2G26350 (E=7e-071) PEX10, ATPEX10 | PEX10; protein binding / zinc ion binding (290 aa)
     
 
  0.961
Bra013969
AT5G17550 (E=4e-104) PEX19-2, PEROXIN 19-2 | PEX19-2 (247 aa)
       
 
  0.945
Bra001079
AT3G03490 (E=8e-100) PEX19-1 | PEX19-1 (peroxin 19-1) (244 aa)
       
 
  0.945
Bra003533
AT1G79810 (E=1e-164) TED3, PEX2, ATPEX2 | TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding (333 aa)
     
 
  0.923
Bra009342
AT5G08470 (E=0.0) PEX1 | PEX1 (peroxisome 1); ATP binding / ATPase/ binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (1121 aa)
     
 
  0.907
Bra021296
AT3G18160 (E=4e-153) PEX3-1 | peroxin-3 family protein (443 aa)
     
 
  0.862
Bra018746
AT1G48635 (E=9e-171) PEX3, PEX3-2 | peroxin-3 family protein (367 aa)
     
 
  0.862
Bra001698
AT1G48635 (E=4e-135) PEX3, PEX3-2 | peroxin-3 family protein (367 aa)
     
 
  0.862
Bra028938
AT5G56290 (E=0.0) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding (730 aa)
     
 
  0.830
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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