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Bra001106 protein (Brassica rapa) - STRING interaction network
"Bra001106" - AT3G04480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001106AT3G04480 (E=0.0) | endoribonuclease (719 aa)    
Predicted Functional Partners:
Bra020542
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (945 aa)
     
  0.982
Bra017279
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (878 aa)
     
  0.982
Bra010782
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (843 aa)
     
  0.982
Bra010781
AT1G56070 (E=2e-298) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (552 aa)
     
  0.982
Bra033895
AT3G22980 (E=2e-238) | elongation factor Tu family protein (481 aa)
     
  0.969
Bra033543
AT3G22980 (E=8e-238) | elongation factor Tu family protein (910 aa)
     
  0.969
Bra030642
AT1G06220 (E=0.0) MEE5 | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding (987 aa)
     
  0.969
Bra027021
AT1G62750 (E=0.0) ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding (775 aa)
     
  0.969
Bra024798
AT1G06220 (E=0.0) MEE5 | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding (984 aa)
     
  0.969
Bra004884
AT2G45030 (E=0.0) | mitochondrial elongation factor, putative (755 aa)
     
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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