STRINGSTRING
Bra001108 protein (Brassica rapa) - STRING interaction network
"Bra001108" - AT3G04500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001108AT3G04500 (E=2e-069) | RNA recognition motif (RRM)-containing protein (188 aa)    
Predicted Functional Partners:
Bra030819
AT1G53720 (E=8e-209) ATCYP59, CYP59 | CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase (544 aa)
       
 
  0.424
Bra025789
AT3G25940 (E=3e-057) | transcription factor S-II (TFIIS) domain-containing protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
           
  0.422
Bra012206
AT3G25940 (E=3e-061) | transcription factor S-II (TFIIS) domain-containing protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
           
  0.422
Bra034571
AT4G03430 (E=4e-285) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (962 aa)
     
   
  0.417
Bra034208
AT4G03430 (E=0.0) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (1015 aa)
     
   
  0.417
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
   
  0.417
Bra000824
AT4G03430 (E=1e-194) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (574 aa)
     
   
  0.417
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]