STRINGSTRING
Bra001109 protein (Brassica rapa) - STRING interaction network
"Bra001109" - AT3G04510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001109AT3G04510 (E=7e-081) LSH2 | LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) (190 aa)    
Predicted Functional Partners:
Bra018612
AT1G08600 (E=0.0) ATRX, CHR20 | ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding (2591 aa)
           
  0.499
Bra040421
AT3G63030 (E=4e-084) MBD4 | MBD4; DNA binding / DNA demethylase/ methyl-CpG binding (371 aa)
           
  0.476
Bra007723
AT3G63030 (E=2e-076) MBD4 | MBD4; DNA binding / DNA demethylase/ methyl-CpG binding (433 aa)
           
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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