STRINGSTRING
Bra001110 protein (Brassica rapa) - STRING interaction network
"Bra001110" - AT3G04620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001110AT3G04620 (E=2e-057) | nucleic acid binding (164 aa)    
Predicted Functional Partners:
Bra033658
AT5G43080 (E=6e-153) CYCA3;1 | CYCA3;1 (Cyclin A3;1); cyclin-dependent protein kinase regulator (356 aa)
       
      0.978
Bra024475
AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family ; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
       
      0.978
Bra018036
AT3G48750 (E=3e-166) CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase (294 aa)
       
      0.978
Bra005763
AT5G03415 (E=2e-129) DPB, ATDPB | DPB; protein binding / protein heterodimerization (365 aa)
       
      0.963
Bra006615
AT5G22220 (E=7e-192) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor (463 aa)
       
      0.952
Bra002398
AT5G22220 (E=7e-111) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor (443 aa)
       
      0.952
Bra029917
AT3G48750 (E=3e-165) CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase (312 aa)
       
      0.947
Bra023047
AT2G36010 (E=6e-196) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (469 aa)
       
      0.906
Bra017268
AT2G36010 (E=1e-193) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (487 aa)
       
      0.906
Bra005305
AT2G36010 (E=6e-192) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (481 aa)
       
      0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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