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Bra001111 protein (Brassica rapa) - STRING interaction network
"Bra001111" - AT3G04610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001111AT3G04610 (E=1e-179) FLK | FLK (flowering locus KH domain); RNA binding / nucleic acid binding (390 aa)    
Predicted Functional Partners:
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
 
  0.923
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
       
    0.919
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
         
  0.872
Bra007458
AT2G43410 (E=3e-192) FPA | FPA; RNA binding (748 aa)
     
  0.763
Bra004761
AT2G43410 (E=0.0) FPA | FPA; RNA binding (926 aa)
     
  0.763
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
       
  0.755
Bra023895
AT3G21215 (E=8e-108) | RNA-binding protein, putative (306 aa)
     
  0.755
Bra038389
AT4G09040 (E=5e-080) | RNA recognition motif (RRM)-containing protein (285 aa)
     
  0.733
Bra041017
AT1G53650 (E=3e-118) CID8 | CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (291 aa)
     
  0.732
Bra040663
AT1G49600 (E=2e-117) ATRBP47A | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding (372 aa)
     
  0.732
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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