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Bra001116 protein (Brassica rapa) - STRING interaction network
"Bra001116" - AT3G04650 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001116AT3G04650 (E=3e-261) | oxidoreductase (488 aa)    
Predicted Functional Partners:
Bra004444
AT2G47590 (E=7e-207) PHR2 | PHR2 (photolyase/blue-light receptor 2); DNA photolyase (455 aa)
   
   
  0.486
Bra037880
AT4G08920 (E=0.0) CRY1, BLU1, HY4, OOP2, ATCRY1 | CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase (680 aa)
         
  0.459
Bra036524
AT5G24850 (E=1e-144) CRY3 | CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding (552 aa)
         
  0.459
Bra030568
AT1G04400 (E=1e-313) CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization (619 aa)
         
  0.459
Bra021122
AT3G15620 (E=3e-124) UVR3 | UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase (328 aa)
         
  0.459
Bra016776
AT1G12370 (E=2e-141) PHR1, UVR2 | PHR1 (PHOTOLYASE 1); DNA photolyase (431 aa)
         
  0.459
CRY2a
AT1G04400 (E=6e-300) CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization (577 aa)
         
  0.459
Bra009798
AT5G24850 (E=6e-267) CRY3 | CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding (546 aa)
         
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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