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Bra001118 protein (Brassica rapa) - STRING interaction network
"Bra001118" - AT3G04680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001118AT3G04680 (E=7e-229) CLPS3 | CLPS3 (CLP-SIMILAR PROTEIN 3); binding ; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (445 aa)    
Predicted Functional Partners:
Bra010767
AT1G30460 (E=2e-211) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (630 aa)
     
  0.999
Bra014881
AT1G30460 (E=3e-141) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (580 aa)
     
  0.996
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
  0.994
Bra004171
AT1G66500 (E=3e-051) | zinc finger (C2H2-type) family protein (224 aa)
       
  0.986
Bra031460
AT1G61010 (E=0.0) CPSF73-I | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding (694 aa)
     
  0.981
Bra016588
AT1G17760 (E=5e-211) CSTF77, ATCSTF77 | CSTF77; protein binding (724 aa)
     
  0.981
Bra022557
AT5G51660 (E=0.0) CPSF160, ATCPSF160 | CPSF160; nucleic acid binding (1448 aa)
     
  0.978
Bra038629
AT5G63420 (E=0.0) emb2746 | emb2746 (embryo defective 2746); DNA binding / catalytic/ hydrolase (907 aa)
     
  0.975
Bra035636
AT5G56930 (E=2e-111) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (642 aa)
     
  0.974
Bra002780
AT5G56930 (E=5e-023) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (132 aa)
     
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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