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Bra001125 protein (Brassica rapa) - STRING interaction network
"Bra001125" - AT3G04820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001125AT3G04820 (E=3e-169) | pseudouridine synthase (678 aa)    
Predicted Functional Partners:
Bra035095
AT1G79150 (E=0.0) | binding (835 aa)
     
      0.944
Bra003620
AT1G79150 (E=5e-030) | binding (163 aa)
     
      0.944
Bra008889
AT5G12410 (E=3e-103) | THUMP domain-containing protein (365 aa)
     
      0.912
Bra006159
AT5G12410 (E=4e-111) | THUMP domain-containing protein (361 aa)
     
      0.912
Bra030183
AT1G29940 (E=0.0) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1152 aa)
   
        0.854
Bra030180
AT1G29940 (E=7e-086) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (191 aa)
   
        0.854
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
        0.821
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
     
        0.821
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
     
        0.816
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.816
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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