STRINGSTRING
Bra001128 protein (Brassica rapa) - STRING interaction network
"Bra001128" - AT3G04850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001128AT3G04850 (E=3e-072) | tesmin/TSO1-like CXC domain-containing protein (521 aa)    
Predicted Functional Partners:
Bra040649
AT3G05380 (E=5e-306) ALY2, ATALY2 | DNA binding / nucleic acid binding / transcription factor (1029 aa)
     
  0.915
Bra039443
AT3G05380 (E=7e-302) ALY2, ATALY2 | DNA binding / nucleic acid binding / transcription factor (1035 aa)
     
  0.915
Bra031282
AT3G21430 (E=0.0) ATALY3, ALY3 | DNA binding (1126 aa)
     
  0.915
Bra020584
AT5G27610 (E=8e-233) ATALY1, ALY1 | DNA binding / transcription factor (919 aa)
     
  0.915
Bra009950
AT5G27610 (E=0.0) ATALY1, ALY1 | DNA binding / transcription factor (1245 aa)
     
  0.915
Bra038707
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1019 aa)
     
  0.894
Bra034764
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1016 aa)
     
  0.894
Bra001446
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1027 aa)
     
  0.894
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
 
    0.889
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
 
    0.889
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]