STRINGSTRING
Bra001141 protein (Brassica rapa) - STRING interaction network
"Bra001141" - AT3G05230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001141AT3G05230 (E=7e-086) | signal peptidase subunit family protein (167 aa)    
Predicted Functional Partners:
Bra040958
AT1G52600 (E=1e-071) | signal peptidase, putative (153 aa)
     
  0.930
Bra030372
AT1G52600 (E=6e-099) | signal peptidase, putative (180 aa)
     
  0.930
Bra027214
AT1G52600 (E=7e-088) | signal peptidase, putative (180 aa)
     
  0.930
Bra021131
AT1G52600 (E=3e-091) | signal peptidase, putative (180 aa)
     
  0.930
Bra018976
AT1G52600 (E=3e-098) | signal peptidase, putative (180 aa)
     
  0.930
Bra034045
AT3G08980 (E=3e-078) | signal peptidase I family protein (154 aa)
     
  0.728
Bra031542
AT1G06870 (E=2e-135) | signal peptidase, putative (356 aa)
     
  0.728
Bra030640
AT1G06200 (E=7e-095) | serine-type peptidase (205 aa)
     
  0.728
Bra029738
AT3G08980 (E=3e-076) | signal peptidase I family protein (280 aa)
     
  0.728
Bra022799
AT2G30440 (E=1e-020) | chloroplast thylakoidal processing peptidase (156 aa)
     
  0.728
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]