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Bra001143 protein (Brassica rapa) - STRING interaction network
"Bra001143" - AT3G05280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001143AT3G05280 (E=8e-149) | integral membrane Yip1 family protein (282 aa)    
Predicted Functional Partners:
Bra024090
AT2G18840 (E=4e-041) | integral membrane Yip1 family protein (183 aa)
     
 
  0.949
Bra011178
AT4G30260 (E=2e-060) | integral membrane Yip1 family protein (261 aa)
     
 
  0.949
Bra010293
AT4G30260 (E=2e-111) | integral membrane Yip1 family protein (281 aa)
     
 
  0.949
Bra017249
AT3G52760 (E=4e-015) | integral membrane Yip1 family protein (108 aa)
     
 
  0.945
Bra005285
AT2G36300 (E=2e-089) | integral membrane Yip1 family protein (256 aa)
     
 
  0.945
Bra037945
AT5G49950 (E=5e-258) | embryogenesis-associated protein-related (541 aa)
       
      0.509
Bra036863
AT3G50790 (E=3e-185) | late embryogenesis abundant protein, putative / LEA protein, putative (407 aa)
       
      0.509
Bra028051
AT1G34340 (E=3e-262) | esterase/lipase/thioesterase family protein (530 aa)
       
      0.509
Bra008599
AT2G03140 (E=0.0) | CAAX amino terminal protease family protein (1841 aa)
       
      0.509
Bra017161
AT2G37690 (E=0.0) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (691 aa)
           
  0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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