STRINGSTRING
Bra001146 protein (Brassica rapa) - STRING interaction network
"Bra001146" - AT3G05310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001146AT3G05310 (E=7e-179) MIRO3 | MIRO3; GTP binding (621 aa)    
Predicted Functional Partners:
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
       
  0.577
Bra040869
AT2G17800 (E=2e-078) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (175 aa)
       
  0.554
Bra038892
AT2G17800 (E=9e-097) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
       
  0.554
Bra037248
AT2G17800 (E=6e-102) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
       
  0.554
Bra036819
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
       
  0.554
Bra035878
AT5G62880 (E=2e-105) ARAC10, ATRAC10, ATROP11 | ARAC10; GTP binding (205 aa)
       
  0.554
Bra029240
AT5G62880 (E=2e-109) ARAC10, ATRAC10, ATROP11 | ARAC10; GTP binding (215 aa)
       
  0.554
Bra025045
AT5G45970 (E=4e-101) ARAC2, ROP7, ATRAC2, ATROP7 | ARAC2 (ARABIDOPSIS RAC-LIKE 2); GTP binding (201 aa)
       
  0.554
Bra022004
AT5G45970 (E=2e-109) ARAC2, ROP7, ATRAC2, ATROP7 | ARAC2 (ARABIDOPSIS RAC-LIKE 2); GTP binding (201 aa)
       
  0.554
Bra017740
AT2G17800 (E=8e-099) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
       
  0.554
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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