STRINGSTRING
Bra001147 protein (Brassica rapa) - STRING interaction network
"Bra001147" - AT3G05420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001147AT3G05420 (E=2e-309) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (683 aa)    
Predicted Functional Partners:
Bra004123
AT1G65650 (E=3e-160) UCH2 | UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease (329 aa)
       
    0.923
Bra039199
AT2G23430 (E=7e-044) ICK1, KRP1 | ICK1; cyclin-dependent protein kinase inhibitor (170 aa)
       
      0.901
Bra018812
AT1G49620 (E=2e-029) KRP7, ICN6, ICK5 | ICK5; cyclin binding / cyclin-dependent protein kinase inhibitor (165 aa)
       
      0.901
Bra020582
AT3G05420 (E=1e-271) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (667 aa)
     
 
0.857
Bra040219
AT3G05420 (E=0.0) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (665 aa)
     
 
0.856
Bra039439
AT3G05420 (E=2e-309) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (667 aa)
     
 
0.856
Bra011638
AT4G35800 (E=0.0) NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2709 aa)
     
 
  0.759
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.671
Bra022176
AT3G16770 (E=1e-085) RAP2.3, ATEBP, ERF72 | ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor (242 aa)
       
 
  0.646
Bra021200
AT3G16770 (E=3e-089) RAP2.3, ATEBP, ERF72 | ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor (243 aa)
       
 
  0.646
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]