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Bra001153 protein (Brassica rapa) - STRING interaction network
"Bra001153" - AT3G05545 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001153AT3G05545 (E=2e-143) | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein (415 aa)    
Predicted Functional Partners:
Bra037631
AT2G44830 (E=2e-207) | protein kinase, putative (648 aa)
           
  0.544
Bra004872
AT2G44830 (E=5e-262) | protein kinase, putative (701 aa)
           
  0.544
Bra024628
AT1G23980 (E=7e-122) | zinc finger (C3HC4-type RING finger) family protein (366 aa)
           
  0.406
Bra009015
AT5G10650 (E=3e-176) | zinc finger (C3HC4-type RING finger) family protein (533 aa)
           
  0.406
Bra004287
AT1G68180 (E=4e-091) | zinc finger (C3HC4-type RING finger) family protein (369 aa)
           
  0.406
Bra003806
AT1G74370 (E=2e-099) | zinc finger (C3HC4-type RING finger) family protein (257 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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