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Bra001156 protein (Brassica rapa) - STRING interaction network
"Bra001156" - AT3G05590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001156AT3G05590 (E=2e-100) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome (187 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
   
  0.999
Bra036669
AT3G24830 (E=2e-111) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
  0.999
Bra036161
AT5G48760 (E=5e-112) | 60S ribosomal protein L13A (RPL13aD) (206 aa)
   
  0.999
Bra020681
AT5G48760 (E=3e-111) | 60S ribosomal protein L13A (RPL13aD) (206 aa)
   
  0.999
Bra015088
AT3G24830 (E=3e-110) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
  0.999
Bra013239
AT3G24830 (E=5e-102) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
  0.999
Bra040853
AT5G39850 (E=2e-093) | 40S ribosomal protein S9 (RPS9C) (197 aa)
   
  0.999
Bra023511
AT5G15200 (E=1e-094) | 40S ribosomal protein S9 (RPS9B) (197 aa)
   
  0.999
Bra006289
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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