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Bra001163 protein (Brassica rapa) - STRING interaction network
"Bra001163" - AT3G05680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001163AT3G05680 (E=0.0) EMB2016 | EMB2016 (embryo defective 2016) (2590 aa)    
Predicted Functional Partners:
Bra007052
AT3G54170 (E=5e-118) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding (348 aa)
       
      0.937
Bra003174
AT3G54170 (E=1e-043) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding (297 aa)
       
      0.937
Bra003173
AT3G54170 (E=4e-029) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding (223 aa)
       
      0.937
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
     
 
  0.669
Bra033025
AT3G27730 (E=0.0) RCK, MER3 | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase (1094 aa)
     
      0.634
Bra029333
AT5G61140 (E=0.0) | DEAD box RNA helicase, putative (2133 aa)
     
      0.634
Bra018324
AT2G30260 (E=1e-094) U2B’’ | U2B’’ (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (228 aa)
       
      0.613
Bra004445
AT2G47580 (E=3e-087) U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding (258 aa)
       
      0.613
Bra028145
AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative (260 aa)
       
      0.612
Bra020542
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (945 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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