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Bra001172 protein (Brassica rapa) - STRING interaction network
"Bra001172" - AT3G05910 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001172AT3G05910 (E=1e-237) | pectinacetylesterase, putative (417 aa)    
Predicted Functional Partners:
Bra025274
AT3G27400 (E=4e-225) | pectate lyase family protein (412 aa)
           
  0.543
Bra035048
AT1G78570 (E=0.0) RHM1, ROL1, ATRHM1 | RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic (670 aa)
           
  0.541
Bra027310
AT3G14790 (E=0.0) RHM3, ATRHM3 | RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic (665 aa)
           
  0.541
Bra026009
AT1G78570 (E=0.0) RHM1, ROL1, ATRHM1 | RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic (672 aa)
           
  0.541
Bra022288
AT3G18165 (E=1e-134) MOS4 | MOS4 (Modifier of snc1,4) (253 aa)
       
      0.505
Bra021297
AT3G18165 (E=4e-136) MOS4 | MOS4 (Modifier of snc1,4) (253 aa)
       
      0.505
Bra019237
AT4G24260 (E=8e-255) ATGH9A3, KOR3 | ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (619 aa)
           
  0.504
Bra013781
AT1G65610 (E=4e-160) ATGH9A2, KOR2 | KOR2; catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (610 aa)
           
  0.504
Bra039675
AT1G53500 (E=0.0) MUM4, RHM2, ATRHM2, ATMUM4 | MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic (665 aa)
           
  0.489
Bra038127
AT1G53500 (E=0.0) MUM4, RHM2, ATRHM2, ATMUM4 | MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic (668 aa)
           
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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