STRINGSTRING
Bra001187 protein (Brassica rapa) - STRING interaction network
"Bra001187" - AT3G06240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001187AT3G06240 (E=3e-104) | F-box family protein (265 aa)    
Predicted Functional Partners:
Bra018485
AT4G12560 (E=3e-192) | F-box family protein (411 aa)
       
   
0.495
Bra015434
AT1G05540 (E=2e-099) | unknown protein (342 aa)
           
  0.478
Bra025722
AT1G19240 (E=6e-026) | unknown protein (107 aa)
           
  0.474
Bra025245
AT3G27025 (E=5e-082) | unknown protein (289 aa)
           
  0.474
Bra009879
AT5G26060 (E=5e-069) | S1 self-incompatibility protein-related (131 aa)
           
  0.474
Bra004722
AT2G42710 (E=2e-119) | ribosomal protein L1 family protein (388 aa)
           
  0.474
Bra001585
AT3G15160 (E=3e-259) | unknown protein (562 aa)
           
  0.474
Bra020658
AT5G49180 (E=4e-237) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)
           
  0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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