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Bra001188 protein (Brassica rapa) - STRING interaction network
"Bra001188" - AT3G06260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001188AT3G06260 (E=2e-191) GATL4 | GATL4 (Galacturonosyltransferase-like 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (346 aa)    
Predicted Functional Partners:
Bra034276
AT4G32850 (E=3e-297) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (771 aa)
       
      0.899
Bra031010
AT1G17980 (E=4e-290) | nucleotidyltransferase family protein (689 aa)
       
      0.899
Bra024894
AT1G17980 (E=4e-232) | nucleotidyltransferase family protein (672 aa)
       
      0.899
Bra016573
AT1G17980 (E=4e-203) | nucleotidyltransferase family protein (692 aa)
       
      0.899
Bra029588
AT3G06560 (E=3e-235) | polynucleotide adenylyltransferase/ protein binding (514 aa)
     
      0.640
Bra024878
AT1G17980 (E=2e-016) | nucleotidyltransferase family protein (197 aa)
       
      0.620
Bra011388
AT4G32850 (E=5e-192) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (418 aa)
       
      0.620
Bra022194
AT3G17060 (E=5e-183) | pectinesterase family protein (344 aa)
     
   
  0.420
Bra001119
AT3G04700 (E=8e-066) | unknown protein (192 aa)
     
   
  0.420
Bra032505
AT5G23790 (E=1e-115) AtGolS5 | AtGolS5 (Arabidopsis thaliana galactinol synthase 5); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (327 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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