STRINGSTRING
Bra001190 protein (Brassica rapa) - STRING interaction network
"Bra001190" - AT3G06290 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001190AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1640 aa)    
Predicted Functional Partners:
Bra040682
AT2G19560 (E=1e-215) EER5 | EER5 (ENHANCED ETHYLENE RESPONSE 5) (413 aa)
       
 
  0.956
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
     
 
  0.944
Bra039271
AT2G46600 (E=2e-059) | calcium-binding protein, putative (133 aa)
       
 
  0.943
Bra026364
AT4G27270 (E=2e-062) | quinone reductase family protein (292 aa)
       
 
  0.943
Bra022723
AT5G54490 (E=4e-053) PBP1 | PBP1 (PINOID-BINDING PROTEIN 1); calcium ion binding / protein binding (131 aa)
       
 
  0.943
Bra004524
AT2G46600 (E=4e-052) | calcium-binding protein, putative (109 aa)
       
 
  0.943
Bra002984
AT4G27280 (E=6e-051) | calcium-binding EF hand family protein (131 aa)
       
 
  0.943
Bra000430
AT2G46600 (E=2e-058) | calcium-binding protein, putative (118 aa)
       
 
  0.943
Bra011395
AT4G32910 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleoporin, Nup85-like (InterPro-IPR011502); Has 161 Blast hits to 158 proteins in 60 species- Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 10; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (722 aa)
     
 
  0.939
Bra037036
AT4G32915 (E=1e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (142 aa)
     
 
  0.939
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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