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Bra001195 protein (Brassica rapa) - STRING interaction network
"Bra001195" - AT3G06350 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001195AT3G06350 (E=2e-268) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (597 aa)    
Predicted Functional Partners:
Bra014158
AT1G48850 (E=9e-215) EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase (441 aa)
 
  0.993
Bra032268
AT1G48850 (E=5e-219) EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase (438 aa)
 
  0.993
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
 
 
  0.987
Bra037185
AT5G66120 (E=2e-196) | 3-dehydroquinate synthase, putative (440 aa)
 
 
  0.984
Bra030270
AT2G21940 (E=3e-140) | shikimate kinase, putative (302 aa)
 
  0.984
Bra011857
AT4G39540 (E=7e-130) | shikimate kinase family protein (296 aa)
 
  0.981
Bra040319
AT2G45300 (E=4e-257) | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (516 aa)
 
 
  0.978
Bra000384
AT2G45300 (E=4e-255) | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (514 aa)
 
 
  0.978
Bra025234
AT3G26900 (E=2e-101) | shikimate kinase family protein (289 aa)
   
  0.976
Bra037757
AT5G63890 (E=6e-231) ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE); histidinol dehydrogenase ; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (464 aa)
   
 
  0.949
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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