STRINGSTRING
Bra001198 protein (Brassica rapa) - STRING interaction network
"Bra001198" - AT3G06450 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001198AT3G06450 (E=0.0) | anion exchange family protein (734 aa)    
Predicted Functional Partners:
Bra035544
AT3G02020 (E=3e-264) AK3 | AK3 (ASPARTATE KINASE 3); aspartate kinase (578 aa)
       
      0.620
Bra023401
AT5G13280 (E=2e-205) AK-LYS1, AK1, AK | AK-LYS1 (ASPARTATE KINASE 1); aspartate kinase (554 aa)
       
      0.620
Bra008840
AT5G13280 (E=2e-258) AK-LYS1, AK1, AK | AK-LYS1 (ASPARTATE KINASE 1); aspartate kinase (551 aa)
       
      0.620
Bra006235
AT5G14060 (E=1e-273) CARAB-AK-LYS | CARAB-AK-LYS; amino acid binding / aspartate kinase (537 aa)
       
      0.620
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
       
      0.613
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
       
      0.613
Bra033538
AT4G04910 (E=2e-273) NSF | NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding (655 aa)
       
      0.612
Bra029529
AT4G04910 (E=0.0) NSF | NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding (736 aa)
       
      0.612
Bra000808
AT4G04910 (E=0.0) NSF | NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding (714 aa)
       
      0.612
Bra032750
AT4G13940 (E=4e-261) HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (485 aa)
       
 
  0.499
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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