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Bra001199 protein (Brassica rapa) - STRING interaction network
"Bra001199" - AT3G06470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001199AT3G06470 (E=2e-121) | GNS1/SUR4 membrane family protein (278 aa)    
Predicted Functional Partners:
Bra036090
AT3G50560 (E=2e-110) | short-chain dehydrogenase/reductase (SDR) family protein (274 aa)
       
  0.846
Bra033983
AT1G67730 (E=7e-163) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (319 aa)
       
  0.655
Bra004251
AT1G67730 (E=4e-164) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (318 aa)
       
  0.655
Bra007154
AT3G55360 (E=7e-174) CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) (310 aa)
     
 
  0.630
Bra038512
AT2G22530 (E=1e-076) | catalytic/ transferase (438 aa)
       
      0.612
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
     
 
  0.521
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
     
 
  0.521
Bra017762
AT4G36480 (E=1e-236) ATLCB1, LCB1, EMB2779, FBR11 | ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase (539 aa)
       
 
  0.514
Bra012007
AT4G36480 (E=4e-094) ATLCB1, LCB1, EMB2779, FBR11 | ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase (447 aa)
       
 
  0.514
Bra011684
AT4G36480 (E=7e-229) ATLCB1, LCB1, EMB2779, FBR11 | ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase (480 aa)
       
 
  0.514
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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