STRINGSTRING
Bra001204 protein (Brassica rapa) - STRING interaction network
"Bra001204" - AT3G06580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001204AT3G06580 (E=2e-136) GAL1, GALK | GALK; ATP binding / galactokinase (540 aa)    
Predicted Functional Partners:
Bra039512
AT5G44480 (E=9e-009) DUR | DUR (DEFECTIVE UGE IN ROOT); UDP-glucose 4-epimerase/ binding / catalytic/ coenzyme binding (115 aa)
   
  0.970
Bra039253
AT1G63180 (E=2e-186) UGE3 | UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3); UDP-glucose 4-epimerase/ protein dimerization (347 aa)
   
  0.970
Bra037029
AT4G33030 (E=2e-244) SQD1 | SQD1; UDPsulfoquinovose synthase/ sulfotransferase (479 aa)
   
  0.970
Bra035262
AT4G10960 (E=7e-194) UGE5 | UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization (347 aa)
   
  0.970
Bra033746
AT5G44480 (E=3e-211) DUR | DUR (DEFECTIVE UGE IN ROOT); UDP-glucose 4-epimerase/ binding / catalytic/ coenzyme binding (412 aa)
   
  0.970
Bra032409
AT1G30620 (E=2e-229) HSR8, MUR4, UXE1 | MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic (419 aa)
   
  0.970
Bra027732
AT1G64440 (E=4e-180) RHD1, REB1, UGE4 | RHD1 (ROOT HAIR DEFECTIVE 1); UDP-glucose 4-epimerase/ protein dimerization (343 aa)
   
  0.970
Bra027626
AT1G63180 (E=6e-196) UGE3 | UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3); UDP-glucose 4-epimerase/ protein dimerization (351 aa)
   
  0.970
Bra027557
AT5G44480 (E=2e-201) DUR | DUR (DEFECTIVE UGE IN ROOT); UDP-glucose 4-epimerase/ binding / catalytic/ coenzyme binding (412 aa)
   
  0.970
Bra020917
AT4G20460 (E=1e-223) | NAD-dependent epimerase/dehydratase family protein (411 aa)
   
  0.970
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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