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Bra001208 protein (Brassica rapa) - STRING interaction network
"Bra001208" - AT3G66652 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001208AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)    
Predicted Functional Partners:
Bra014881
AT1G30460 (E=3e-141) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (580 aa)
     
  0.999
Bra010767
AT1G30460 (E=2e-211) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (630 aa)
     
  0.999
Bra030348
AT5G39930 (E=5e-159) CLPS5 | CLPS5 (CLP1-SIMILAR PROTEIN 5) ; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (434 aa)
     
  0.999
Bra003913
AT1G71800 (E=6e-200) | cleavage stimulation factor, putative (487 aa)
     
  0.999
Bra007985
AT1G71800 (E=4e-182) | cleavage stimulation factor, putative (451 aa)
     
  0.999
Bra002677
AT5G58040 (E=0.0) ATFIP1[V] | ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding (1172 aa)
     
0.999
Bra035636
AT5G56930 (E=2e-111) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (642 aa)
     
  0.999
Bra002780
AT5G56930 (E=5e-023) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (132 aa)
     
  0.999
Bra034276
AT4G32850 (E=3e-297) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (771 aa)
     
  0.998
Bra031010
AT1G17980 (E=4e-290) | nucleotidyltransferase family protein (689 aa)
     
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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