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Bra001213 protein (Brassica rapa) - STRING interaction network
"Bra001213" - AT3G06680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001213AT3G06680 (E=1e-030) | 60S ribosomal protein L29 (RPL29B) (193 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra025017
AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family (1149 aa)
     
  0.999
Bra012616
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
     
  0.999
Bra017545
AT4G18100 (E=4e-070) | 60S ribosomal protein L32 (RPL32A) (133 aa)
     
  0.999
Bra013284.1-P
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
     
  0.999
Bra012616.1-P
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
     
  0.999
Bra007238
AT2G40510 (E=4e-037) | 40S ribosomal protein S26 (RPS26A) (134 aa)
     
  0.999
Bra003237
AT3G56340 (E=3e-033) | 40S ribosomal protein S26 (RPS26C) (284 aa)
     
  0.999
Bra000193
AT3G56340 (E=4e-034) | 40S ribosomal protein S26 (RPS26C) (129 aa)
     
  0.999
Bra016981
AT2G40610 (E=5e-124) ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11 | ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (786 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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