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Bra001214 protein (Brassica rapa) - STRING interaction network
"Bra001214" - AT3G06760 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra001214AT3G06760 (E=2e-020) | INVOLVED IN- response to water deprivation; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Drought induced 19 (InterPro-IPR008598); BEST Arabidopsis thaliana protein match is- HRB1 (HYPERSENSITIVE TO RED AND BLUE); protein binding (TAIR-AT5G49230.1); Has 133 Blast hits to 133 proteins in 15 species- Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (197 aa)    
Predicted Functional Partners:
Bra037756
AT5G63870 (E=2e-204) PP7 | PP7 (SERINE/THREONINE PHOSPHATASE 7); protein serine/threonine phosphatase (407 aa)
       
 
  0.782
Bra018554
AT5G08600 (E=6e-224) | U3 ribonucleoprotein (Utp) family protein (840 aa)
           
  0.581
Bra023445
AT5G14030 (E=6e-080) | translocon-associated protein beta (TRAPB) family protein (194 aa)
           
  0.542
Bra008785
AT5G14030 (E=2e-085) | translocon-associated protein beta (TRAPB) family protein (193 aa)
           
  0.542
Bra006233
AT5G14030 (E=5e-081) | translocon-associated protein beta (TRAPB) family protein (195 aa)
           
  0.542
Bra022192
AT4G16250 (E=0.0) PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer (1192 aa)
       
 
  0.495
Bra036271
AT4G02400 (E=6e-159) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- small-subunit processome; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Small-subunit processome, Utp14 (InterPro-IPR006709); BEST Arabidopsis thaliana protein match is- U3 ribonucleoprotein (Utp) family protein (TAIR-AT5G08600.1); Has 7412 Blast hits to 4272 proteins in 301 species- Archae - 10; Bacteria - 517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other Eukaryotes - 2846 (source- NCBI BLink). (783 aa)
           
  0.431
Bra039799
AT3G53520 (E=8e-229) UXS1, ATUXS1 | UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); UDP-glucuronate decarboxylase/ catalytic (427 aa)
           
  0.410
Bra017170
AT3G53740 (E=9e-054) | 60S ribosomal protein L36 (RPL36B) (112 aa)
           
  0.406
Bra005180
AT3G53740 (E=8e-055) | 60S ribosomal protein L36 (RPL36B) (112 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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