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Bra001215 protein (Brassica rapa) - STRING interaction network
"Bra001215" - AT3G06770 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001215AT3G06770 (E=2e-192) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (449 aa)    
Predicted Functional Partners:
Bra034960
AT3G43270 (E=2e-238) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (526 aa)
       
  0.757
Bra011341
AT4G32375 (E=1e-124) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (393 aa)
   
     
  0.744
Bra022928
AT2G33160 (E=2e-189) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (407 aa)
   
     
  0.696
Bra034140
AT3G10720 (E=6e-297) | pectinesterase, putative (613 aa)
       
  0.654
Bra009406
AT5G04970 (E=2e-279) | pectinesterase, putative (640 aa)
       
  0.654
Bra005833
AT5G04970 (E=8e-279) | pectinesterase, putative (593 aa)
       
  0.654
Bra032696
AT4G13210 (E=1e-213) | lyase/ pectate lyase (413 aa)
   
 
  0.608
Bra028549
AT3G53190 (E=7e-256) | pectate lyase family protein (490 aa)
   
 
  0.599
Bra040910
AT5G07420 (E=8e-153) | pectinesterase family protein (295 aa)
       
  0.568
Bra040563
AT1G53830 (E=1e-282) ATPME2 | ATPME2; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (585 aa)
       
  0.568
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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