STRINGSTRING
Bra001216 protein (Brassica rapa) - STRING interaction network
"Bra001216" - AT3G06778 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001216AT3G06778 (E=3e-104) | heat shock protein binding / unfolded protein binding (226 aa)    
Predicted Functional Partners:
Bra001539
AT3G14200 (E=2e-081) | DNAJ heat shock N-terminal domain-containing protein (233 aa)
   
          0.497
Bra021539
AT3G14200 (E=4e-073) | DNAJ heat shock N-terminal domain-containing protein (223 aa)
   
          0.494
Bra027363
AT3G14200 (E=7e-081) | DNAJ heat shock N-terminal domain-containing protein (228 aa)
   
          0.488
Bra007953
AT1G71000 (E=2e-067) | heat shock protein binding (164 aa)
   
          0.476
Bra019942
AT1G10350 (E=1e-022) | DNAJ heat shock protein, putative (152 aa)
   
          0.474
Bra038381
AT4G09350 (E=9e-104) | DNAJ heat shock N-terminal domain-containing protein (243 aa)
   
          0.470
Bra030244
AT2G22360 (E=5e-018) | DNAJ heat shock family protein (191 aa)
   
          0.465
Bra002554
AT5G59610 (E=8e-061) | DNAJ heat shock N-terminal domain-containing protein (270 aa)
   
          0.464
Bra020309
AT5G59610 (E=7e-065) | DNAJ heat shock N-terminal domain-containing protein (277 aa)
   
          0.456
Bra032742
AT4G13830 (E=2e-075) J20 | J20 (DNAJ-LIKE 20); heat shock protein binding (200 aa)
   
          0.450
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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