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Bra001219 protein (Brassica rapa) - STRING interaction network
"Bra001219" - AT5G49180 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001219AT5G49180 (E=2e-194) | pectinesterase family protein (577 aa)    
Predicted Functional Partners:
Bra033347
AT1G02790 (E=2e-198) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
   
 
  0.706
Bra032585
AT1G02790 (E=9e-191) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (418 aa)
   
 
  0.706
Bra030510
AT1G02790 (E=1e-201) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
   
 
  0.706
Bra010873
AT1G02790 (E=2e-197) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (421 aa)
   
 
  0.706
Bra010872
AT1G02790 (E=8e-200) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
   
 
  0.706
Bra000327
AT1G43080 (E=2e-163) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (474 aa)
       
  0.699
Bra037678
AT2G43870 (E=3e-197) | polygalacturonase, putative / pectinase, putative (388 aa)
       
  0.698
Bra037676
AT2G43890 (E=1e-208) | polygalacturonase, putative / pectinase, putative (394 aa)
       
  0.698
Bra007483
AT3G59850 (E=3e-195) | polygalacturonase, putative / pectinase, putative (388 aa)
       
  0.698
Bra004791
AT2G43890 (E=2e-214) | polygalacturonase, putative / pectinase, putative (394 aa)
       
  0.698
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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