STRINGSTRING
Bra001223 protein (Brassica rapa) - STRING interaction network
"Bra001223" - AT3G06880 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001223AT3G06880 (E=2e-283) | nucleotide binding (1253 aa)    
Predicted Functional Partners:
Bra024559
AT1G23030 (E=9e-302) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein (609 aa)
           
  0.645
Bra016165
AT1G71020 (E=2e-250) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein (616 aa)
           
  0.505
Bra012355
AT1G23030 (E=1e-257) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein (588 aa)
           
  0.505
Bra011395
AT4G32910 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleoporin, Nup85-like (InterPro-IPR011502); Has 161 Blast hits to 158 proteins in 60 species- Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 10; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (722 aa)
           
  0.502
Bra018937
AT1G51940 (E=3e-286) | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (634 aa)
           
  0.472
Bra014302
AT1G51940 (E=2e-287) | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (610 aa)
           
  0.472
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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