STRINGSTRING
Bra001224 protein (Brassica rapa) - STRING interaction network
"Bra001224" - AT3G06890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001224AT3G06890 (E=4e-020) | unknown protein (126 aa)    
Predicted Functional Partners:
Bra034575
AT4G33600 (E=4e-225) | unknown protein (463 aa)
           
  0.606
Bra037000
AT4G33590 (E=1e-221) | unknown protein (447 aa)
           
  0.573
Bra034574
AT4G33590 (E=2e-238) | unknown protein (466 aa)
           
  0.573
Bra003931
AT1G71250 (E=3e-177) | GDSL-motif lipase/hydrolase family protein (365 aa)
           
  0.541
Bra028818
AT5G03820 (E=9e-173) | GDSL-motif lipase/hydrolase family protein (350 aa)
           
  0.522
Bra020216
AT5G22810 (E=6e-180) | GDSL-motif lipase, putative (360 aa)
           
  0.495
Bra005782
AT5G03810 (E=9e-167) | carboxylesterase/ hydrolase, acting on ester bonds / lipase (353 aa)
           
  0.495
Bra040671
AT1G49770 (E=1e-119) RGE1, ZOU | RGE1 (RETARDED GROWTH OF EMBRYO 1); DNA binding / transcription factor (313 aa)
           
  0.478
Bra011800
AT4G38000 (E=8e-078) | Dof-type zinc finger domain-containing protein (242 aa)
           
  0.476
Bra006318
AT5G15720 (E=2e-173) GLIP7 | GLIP7; carboxylesterase/ lipase (366 aa)
           
  0.457
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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