STRINGSTRING
Bra001228 protein (Brassica rapa) - STRING interaction network
"Bra001228" - AT3G06970 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001228AT3G06970 (E=5e-029) | RNA binding / nucleic acid binding / nucleotide binding (362 aa)    
Predicted Functional Partners:
Bra004852
AT2G44640 (E=2e-192) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PDE320 (PIGMENT DEFECTIVE 320) (TAIR-AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (463 aa)
           
  0.526
Bra000357
AT2G44640 (E=7e-192) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PDE320 (PIGMENT DEFECTIVE 320) (TAIR-AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (461 aa)
           
  0.526
Bra040299
AT3G06960 (E=4e-168) PDE320, TGD4 | PDE320 (PIGMENT DEFECTIVE 320) (468 aa)
           
  0.406
Bra022481
AT1G65410 (E=4e-150) ATNAP11, TGD3 | ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11); transporter (329 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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