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Bra001239 protein (Brassica rapa) - STRING interaction network
"Bra001239" - AT2G36850 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra001239AT2G36850 (E=0.0) ATGSL08, GSL8, GSL08, ATGSL8 | GSL8 (GLUCAN SYNTHASE-LIKE 8); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (1907 aa)    
Predicted Functional Partners:
Bra032004
AT3G03250 (E=2e-212) UGP | UGP (UDP-glucose pyrophosphorylase); UTP-glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase (434 aa)
         
  0.532
Bra006395
AT5G17310 (E=2e-244) | UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative (470 aa)
         
  0.532
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
       
 
  0.525
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
       
 
  0.525
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
       
 
  0.525
Bra032539
AT1G03860 (E=6e-152) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
       
      0.508
Bra030546
AT1G03860 (E=2e-152) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
       
      0.508
Bra015273
AT1G03860 (E=7e-149) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
       
      0.508
Bra011035
AT4G28510 (E=2e-134) ATPHB1 | ATPHB1 (PROHIBITIN 1) (290 aa)
       
      0.508
Bra010364
AT4G28510 (E=3e-119) ATPHB1 | ATPHB1 (PROHIBITIN 1) (242 aa)
       
      0.508
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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