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Bra001241 protein (Brassica rapa) - STRING interaction network
"Bra001241" - AT3G07195 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001241AT3G07195 (E=1e-057) | proline-rich family protein (210 aa)    
Predicted Functional Partners:
Bra037089
AT3G52560 (E=1e-059) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (184 aa)
       
    0.932
Bra033422
AT3G52560 (E=7e-078) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (146 aa)
       
    0.932
Bra024574
AT1G23260 (E=3e-084) MMZ1, UEV1A | MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (158 aa)
       
    0.932
Bra016355
AT1G23260 (E=4e-085) MMZ1, UEV1A | MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (158 aa)
       
    0.932
Bra007932
AT1G70660 (E=5e-080) MMZ2, UEV1B | MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (159 aa)
       
    0.932
Bra006933
AT3G52560 (E=3e-079) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (146 aa)
       
    0.932
Bra041101
AT3G08690 (E=8e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (148 aa)
       
  0.884
Bra036549
AT5G25760 (E=2e-085) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (190 aa)
       
  0.884
Bra035606
AT5G56170 (E=2e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- LRE (LORELEI) (TAIR-AT4G26466.1); Has 71 Blast hits to 71 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (299 aa)
       
  0.884
Bra035605
AT5G56150 (E=2e-082) UBC30 | UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase (148 aa)
       
  0.884
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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